HL_4W2F_053

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4W2F|1|BA|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_053 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0412

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4W2F|1|BA|G|409
4W2F|1|BA|U|410
4W2F|1|BA|U|411
4W2F|1|BA|C|412
4W2F|1|BA|G|413
4W2F|1|BA|U|414
4W2F|1|BA|G|415
4W2F|1|BA|G|416
4W2F|1|BA|A|417
4W2F|1|BA|G|418
4W2F|1|BA|C|419

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BP

50S Ribosomal Protein L15