HL_4W2F_054

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4W2F|1|BA|G|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_054 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0519

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4W2F|1|BA|G|437
4W2F|1|BA|G|438
4W2F|1|BA|A|439
4W2F|1|BA|C|440
4W2F|1|BA|C|441
4W2F|1|BA|A|442
4W2F|1|BA|C|443
4W2F|1|BA|C|444

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BP

50S Ribosomal Protein L15