HL_4W2F_066

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGCCCACCAGCC

Length

12 nucleotides

Bulged bases

4W2F|1|BA|C|935, 4W2F|1|BA|C|936

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_066 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2881

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4W2F|1|BA|G|929
4W2F|1|BA|G|930
4W2F|1|BA|C|931
4W2F|1|BA|C|932
4W2F|1|BA|C|933
4W2F|1|BA|A|934
4W2F|1|BA|C|935
4W2F|1|BA|C|936
4W2F|1|BA|A|937
4W2F|1|BA|G|938
4W2F|1|BA|C|939
4W2F|1|BA|C|940

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AM

30S Ribosomal Protein S13

Chain AW

Transfer RNA; tRNA