HL_4W2F_096

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_096 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0421

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4W2F|1|BA|C|2336
4W2F|1|BA|G|2337
4W2F|1|BA|C|2338
4W2F|1|BA|A|2339
4W2F|1|BA|A|2340
4W2F|1|BA|G|2341
4W2F|1|BA|G|2342
4W2F|1|BA|G|2343

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain B0

50S Ribosomal Protein L27

Chain BG

50S Ribosomal Protein L5

Chain BQ

50S Ribosomal Protein L16