HL_4W2F_098

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_098 not in the Motif Atlas

Homologous match to HL_7RQB_058

Geometric discrepancy: 0.0458

The information below is about HL_7RQB_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4W2F|1|BA|C|2386
4W2F|1|BA|G|2387
4W2F|1|BA|A|2388
4W2F|1|BA|A|2389
4W2F|1|BA|A|2390
4W2F|1|BA|G|2391

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B6

50S Ribosomal Protein L33

Chain BS

50S Ribosomal Protein L18