HL_4W2F_099

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4W2F|1|BA|U|2418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_099 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0444

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4W2F|1|BA|C|2416
4W2F|1|BA|G|2417
4W2F|1|BA|U|2418
4W2F|1|BA|G|2419
4W2F|1|BA|U|2420
4W2F|1|BA|G|2421
4W2F|1|BA|G|2422
4W2F|1|BA|A|2423
4W2F|1|BA|A|2424
4W2F|1|BA|G|2425

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BP

50S Ribosomal Protein L15