HL_4W2F_157

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4W2F|1|DA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_157 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0756

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4W2F|1|DA|G|194
4W2F|1|DA|A|195
4W2F|1|DA|A|196
4W2F|1|DA|A|197
4W2F|1|DA|C|198
4W2F|1|DA|A|199
4W2F|1|DA|U|200
4W2F|1|DA|C|201

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S Ribosomal Protein L28

Chain DP

50S Ribosomal Protein L15