3D structure

PDB id
4W2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CGCAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4W2F_206 not in the Motif Atlas
Homologous match to HL_7RQB_056
Geometric discrepancy: 0.0616
The information below is about HL_7RQB_056
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_12078.4
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
31

Unit IDs

4W2F|1|DA|C|2324
4W2F|1|DA|G|2325
4W2F|1|DA|C|2326
4W2F|1|DA|A|2327
4W2F|1|DA|A|2328
4W2F|1|DA|G|2329
4W2F|1|DA|G|2330
4W2F|1|DA|G|2331

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain CX
Transfer RNA; tRNA
Chain D0
50S Ribosomal Protein L27
Chain DG
50S Ribosomal Protein L5
Chain DQ
50S Ribosomal Protein L16

Coloring options:


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