HL_4W2F_218

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4W2F|1|DA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2F_218 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0479

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4W2F|1|DA|G|2819
4W2F|1|DA|A|2820
4W2F|1|DA|A|2821
4W2F|1|DA|G|2822
4W2F|1|DA|A|2823
4W2F|1|DA|C|2824
4W2F|1|DA|C|2825
4W2F|1|DA|A|2826
4W2F|1|DA|C|2827

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S Ribosomal Protein L3

Chain DR

50S Ribosomal Protein L17

Chain DT

50S Ribosomal Protein L19