HL_4W2F_224
3D structure
- PDB id
- 4W2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- 4W2F|1|AY|U|33
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4W2F_224 not in the Motif Atlas
- Homologous match to HL_1U0B_002
- Geometric discrepancy: 0.4872
- The information below is about HL_1U0B_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4W2F|1|AY|A|31
4W2F|1|AY|PSU|32
4W2F|1|AY|U|33
4W2F|1|AY|G|34
4W2F|1|AY|A|35
4W2F|1|AY|A|36
4W2F|1|AY|MIA|37
4W2F|1|AY|A|38
4W2F|1|AY|PSU|39
Current chains
- Chain AY
- A/P-site tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AG
- 30S Ribosomal Protein S7
- Chain AK
- 30S Ribosomal Protein S11
- Chain AV
- mRNA
- Chain AX
- Transfer RNA; tRNA
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