HL_4W2F_230
3D structure
- PDB id
- 4W2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4W2F_230 not in the Motif Atlas
- Homologous match to HL_1U0B_002
- Geometric discrepancy: 0.4317
- The information below is about HL_1U0B_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
4W2F|1|CY|A|31
4W2F|1|CY|PSU|32
4W2F|1|CY|U|33
4W2F|1|CY|G|34
4W2F|1|CY|A|35
4W2F|1|CY|A|36
4W2F|1|CY|MIA|37
4W2F|1|CY|A|38
4W2F|1|CY|PSU|39
Current chains
- Chain CY
- A/P-site tRNA
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CG
- 30S Ribosomal Protein S7
- Chain CK
- 30S Ribosomal Protein S11
- Chain CV
- mRNA
- Chain CX
- Transfer RNA; tRNA
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