HL_4W2F_232

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGCUAGGGGGCCCACCAGCCUACCAAACC

Length

29 nucleotides

Bulged bases

4W2F|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2F|1|DA|G|874
4W2F|1|DA|G|875
4W2F|1|DA|C|876
4W2F|1|DA|U|877
4W2F|1|DA|A|878
4W2F|1|DA|G|879
4W2F|1|DA|G|880
4W2F|1|DA|G|881
4W2F|1|DA|G|882
4W2F|1|DA|G|883
4W2F|1|DA|C|884
4W2F|1|DA|C|885
4W2F|1|DA|C|886
4W2F|1|DA|A|887
4W2F|1|DA|C|888
4W2F|1|DA|C|889
4W2F|1|DA|A|890
4W2F|1|DA|G|892
4W2F|1|DA|C|893
4W2F|1|DA|C|894
4W2F|1|DA|U|895
4W2F|1|DA|A|896
4W2F|1|DA|C|897
4W2F|1|DA|C|898
4W2F|1|DA|A|899
4W2F|1|DA|A|900
4W2F|1|DA|A|901
4W2F|1|DA|C|902
4W2F|1|DA|C|903

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CM

30S Ribosomal Protein S13

Chain CW

Transfer RNA; tRNA

Chain DQ

50S Ribosomal Protein L16

Chain DZ

50S Ribosomal Protein L25