HL_4W2G_048

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2G_048 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.046

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

4W2G|1|BA|C|235
4W2G|1|BA|G|236
4W2G|1|BA|G|237
4W2G|1|BA|C|238
4W2G|1|BA|G|239
4W2G|1|BA|A|240
4W2G|1|BA|G|241

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain B1

50S Ribosomal Protein L28

Chain B8

50S Ribosomal Protein L35

Chain BP

50S Ribosomal Protein L15