HL_4W2G_118

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2G_118 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.092

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4W2G|1|CA|C|320
4W2G|1|CA|A|321
4W2G|1|CA|C|322
4W2G|1|CA|U|323
4W2G|1|CA|G|324
4W2G|1|CA|A|325
4W2G|1|CA|G|326
4W2G|1|CA|A|327
4W2G|1|CA|C|328
4W2G|1|CA|A|329
4W2G|1|CA|C|330
4W2G|1|CA|G|331
4W2G|1|CA|G|332
4W2G|1|CA|G|333

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S Ribosomal Protein S16

Chain CT

30S Ribosomal Protein S20