HL_4W2G_207

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4W2G|1|DA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2G_207 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0603

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4W2G|1|DA|C|2404
4W2G|1|DA|G|2405
4W2G|1|DA|U|2406
4W2G|1|DA|G|2407
4W2G|1|DA|U|2408
4W2G|1|DA|G|2409
4W2G|1|DA|G|2410
4W2G|1|DA|A|2411
4W2G|1|DA|A|2412
4W2G|1|DA|G|2413

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S Ribosomal Protein L28

Chain DP

50S Ribosomal Protein L15