HL_4W2H_036

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCCGGAUCCGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2H|1|AY|C|2
4W2H|1|AY|C|3
4W2H|1|AY|C|4
4W2H|1|AY|G|5
4W2H|1|AY|G|6
4W2H|1|AY|A|7
4W2H|1|AY|U|66
4W2H|1|AY|C|67
4W2H|1|AY|C|68
4W2H|1|AY|G|69
4W2H|1|AY|G|70
4W2H|1|AY|G|71

Current chains

Chain AY

E-site tRNA Acceptor Stem

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain B6

50S Ribosomal Protein L33

Chain BA

Large subunit ribosomal RNA; LSU rRNA