HL_4W2H_060

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4W2H|1|BA|U|874, 4W2H|1|BA|G|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_060 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.0605

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4W2H|1|BA|U|873
4W2H|1|BA|U|874
4W2H|1|BA|U|875
4W2H|1|BA|A|876
4W2H|1|BA|G|877
4W2H|1|BA|G|878

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BP

50S Ribosomal Protein L15