HL_4W2H_063

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_063 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0482

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4W2H|1|BA|G|1024
4W2H|1|BA|G|1025
4W2H|1|BA|A|1026
4W2H|1|BA|A|1027
4W2H|1|BA|C|1028
4W2H|1|BA|A|1029
4W2H|1|BA|A|1030
4W2H|1|BA|C|1031

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B3

50S Ribosomal Protein L30

Chain BU

50S Ribosomal Protein L20