HL_4W2H_084

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4W2H|1|BA|U|1977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_084 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0559

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4W2H|1|BA|G|1971
4W2H|1|BA|G|1972
4W2H|1|BA|U|1973
4W2H|1|BA|A|1974
4W2H|1|BA|A|1975
4W2H|1|BA|G|1976
4W2H|1|BA|U|1977
4W2H|1|BA|U|1978
4W2H|1|BA|C|1979

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BO

50S Ribosomal Protein L14