HL_4W2H_088

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4W2H|1|BA|G|2262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_088 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0696

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2H|1|BA|C|2260
4W2H|1|BA|U|2261
4W2H|1|BA|G|2262
4W2H|1|BA|G|2263
4W2H|1|BA|G|2264
4W2H|1|BA|G|2265
4W2H|1|BA|C|2266
4W2H|1|BA|G|2267
4W2H|1|BA|G|2268

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain B0

50S Ribosomal Protein L27

Chain BQ

50S Ribosomal Protein L16