HL_4W2H_113

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_113 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.0683

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4W2H|1|CA|U|296
4W2H|1|CA|G|297
4W2H|1|CA|A|298
4W2H|1|CA|G|299
4W2H|1|CA|A|300
4W2H|1|CA|G|301

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CD

30S Ribosomal Protein S4

Chain CE

30S Ribosomal Protein S5

Chain CQ

30S Ribosomal Protein S17