HL_4W2H_135
3D structure
- PDB id
- 4W2H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4W2H_135 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.1446
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4W2H|1|CA|C|1314
4W2H|1|CA|U|1315
4W2H|1|CA|G|1316
4W2H|1|CA|C|1317
4W2H|1|CA|A|1318
4W2H|1|CA|A|1319
4W2H|1|CA|C|1320
4W2H|1|CA|C|1321
4W2H|1|CA|C|1322
4W2H|1|CA|G|1323
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CM
- 30S Ribosomal Protein S13
- Chain CN
- 30S Ribosomal Protein S14
- Chain CS
- 30S Ribosomal Protein S19
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