HL_4W2H_154

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

4W2H|1|DA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_154 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0604

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4W2H|1|DA|G|382
4W2H|1|DA|U|383
4W2H|1|DA|U|384
4W2H|1|DA|C|385
4W2H|1|DA|G|386
4W2H|1|DA|U|387
4W2H|1|DA|G|388
4W2H|1|DA|G|389
4W2H|1|DA|A|390
4W2H|1|DA|G|391
4W2H|1|DA|C|392

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S Ribosomal Protein L28

Chain DP

50S Ribosomal Protein L15