HL_4W2H_166

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

4W2H|1|DA|A|781, 4W2H|1|DA|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_166 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0508

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4W2H|1|DA|U|779
4W2H|1|DA|G|780
4W2H|1|DA|A|781
4W2H|1|DA|A|782
4W2H|1|DA|A|783
4W2H|1|DA|A|784
4W2H|1|DA|G|785

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DD

50S Ribosomal Protein L2