HL_4W2H_170

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2H_170 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0777

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4W2H|1|DA|G|978
4W2H|1|DA|G|979
4W2H|1|DA|A|980
4W2H|1|DA|A|981
4W2H|1|DA|C|982
4W2H|1|DA|A|983
4W2H|1|DA|A|984
4W2H|1|DA|C|985

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D3

50S Ribosomal Protein L30

Chain DU

50S Ribosomal Protein L20