HL_4W2H_215
3D structure
- PDB id
- 4W2H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UUCCCAUUCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 4W2H|1|DB|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4W2H_215 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.0861
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4W2H|1|DB|U|34
4W2H|1|DB|U|35
4W2H|1|DB|C|36
4W2H|1|DB|C|37
4W2H|1|DB|C|38
4W2H|1|DB|A|39
4W2H|1|DB|U|40
4W2H|1|DB|U|41
4W2H|1|DB|C|42
4W2H|1|DB|C|43
4W2H|1|DB|G|44
4W2H|1|DB|A|45
4W2H|1|DB|A|46
4W2H|1|DB|C|47
4W2H|1|DB|A|48
Current chains
- Chain DB
- 5S Ribosomal RNA
Nearby chains
- Chain D4
- 50S Ribosomal Protein L31
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S Ribosomal Protein L5
- Chain DS
- 50S Ribosomal Protein L18
Coloring options: