HL_4W2I_046

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4W2I|1|BA|A|185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2I_046 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.0613

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4W2I|1|BA|G|183
4W2I|1|BA|A|184
4W2I|1|BA|A|185
4W2I|1|BA|A|186
4W2I|1|BA|C|187
4W2I|1|BA|A|188
4W2I|1|BA|U|189
4W2I|1|BA|C|190

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BP

50S Ribosomal Protein L15