HL_4W2I_095

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2I_095 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.085

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4W2I|1|BA|G|2315
4W2I|1|BA|G|2316
4W2I|1|BA|A|2317
4W2I|1|BA|C|2318
4W2I|1|BA|G|2319
4W2I|1|BA|G|2320
4W2I|1|BA|A|2321
4W2I|1|BA|A|2322
4W2I|1|BA|A|2323
4W2I|1|BA|U|2324
4W2I|1|BA|C|2325

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S Ribosomal Protein L5