HL_4W2I_123

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

4W2I|1|CA|C|470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2I_123 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.1295

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4W2I|1|CA|C|458
4W2I|1|CA|G|460
4W2I|1|CA|A|461
4W2I|1|CA|C|470
4W2I|1|CA|G|471
4W2I|1|CA|A|472
4W2I|1|CA|G|473

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S Ribosomal Protein S16