HL_4W2I_133

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2I_133 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.1736

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4W2I|1|CA|U|1012
4W2I|1|CA|G|1013
4W2I|1|CA|A|1014
4W2I|1|CA|A|1015
4W2I|1|CA|A|1016
4W2I|1|CA|G|1017

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CN

30S Ribosomal Protein S14

Chain CS

30S Ribosomal Protein S19