HL_4W2I_149
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4W2I_149 not in the Motif Atlas
- Homologous match to HL_5L4O_003
- Geometric discrepancy: 0.0882
- The information below is about HL_5L4O_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4W2I|1|CX|G|53
4W2I|1|CX|5MU|54
4W2I|1|CX|PSU|55
4W2I|1|CX|C|56
4W2I|1|CX|A|57
4W2I|1|CX|A|58
4W2I|1|CX|A|59
4W2I|1|CX|U|60
4W2I|1|CX|C|61
Current chains
- Chain CX
- E-site tRNA
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DG
- 50S Ribosomal Protein L5
- Chain DQ
- 50S Ribosomal Protein L16
Coloring options: