HL_4W2I_206

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W2I_206 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1039

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4W2I|1|DA|G|2303
4W2I|1|DA|G|2304
4W2I|1|DA|A|2305
4W2I|1|DA|C|2306
4W2I|1|DA|G|2307
4W2I|1|DA|G|2308
4W2I|1|DA|A|2309
4W2I|1|DA|A|2310
4W2I|1|DA|A|2311
4W2I|1|DA|U|2312
4W2I|1|DA|C|2313

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S Ribosomal Protein L5