HL_4W4G_008

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W4G_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0636

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4W4G|1|QA|C|320
4W4G|1|QA|A|321
4W4G|1|QA|C|322
4W4G|1|QA|U|323
4W4G|1|QA|G|324
4W4G|1|QA|A|325
4W4G|1|QA|G|326
4W4G|1|QA|A|327
4W4G|1|QA|C|328
4W4G|1|QA|A|329
4W4G|1|QA|C|330
4W4G|1|QA|G|331
4W4G|1|QA|G|332
4W4G|1|QA|G|333

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain QT

30S ribosomal protein S20