HL_4W4G_068

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W4G_068 not in the Motif Atlas

Geometric match to HL_1H4S_002

Geometric discrepancy: 0.2529

The information below is about HL_1H4S_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

tRNA anticodon loop with synthetase

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4W4G|1|RA|C|1092
4W4G|1|RA|G|1093
4W4G|1|RA|U|1094
4W4G|1|RA|A|1095
4W4G|1|RA|A|1096
4W4G|1|RA|U|1097
4W4G|1|RA|A|1098
4W4G|1|RA|G|1099

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6