HL_4W4G_122

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

4W4G|1|XA|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W4G_122 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.3

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4W4G|1|XA|C|458
4W4G|1|XA|G|464
4W4G|1|XA|A|465
4W4G|1|XA|C|466
4W4G|1|XA|G|467
4W4G|1|XA|A|468
4W4G|1|XA|G|474

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16