HL_4W4G_148

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W4G_148 not in the Motif Atlas

Homologous match to HL_3TUP_003

Geometric discrepancy: 0.3042

The information below is about HL_3TUP_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

4W4G|1|XW|G|53
4W4G|1|XW|U|54
4W4G|1|XW|U|55
4W4G|1|XW|C|56
4W4G|1|XW|A|57
4W4G|1|XW|A|58
4W4G|1|XW|A|59
4W4G|1|XW|U|60
4W4G|1|XW|C|61

Current chains

Chain XW

tRNA fMet

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA