HL_4W4G_201

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4W4G|1|YA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W4G_201 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0723

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W4G|1|YA|C|2248
4W4G|1|YA|U|2249
4W4G|1|YA|G|2250
4W4G|1|YA|G|2251
4W4G|1|YA|G|2252
4W4G|1|YA|G|2253
4W4G|1|YA|C|2254
4W4G|1|YA|G|2255
4W4G|1|YA|G|2256

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain Y0

50S ribosomal protein L27

Chain YQ

50S ribosomal protein L16