HL_4W4G_216

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4W4G|1|YA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4W4G_216 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.074

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4W4G|1|YA|G|2819
4W4G|1|YA|A|2820
4W4G|1|YA|A|2821
4W4G|1|YA|G|2822
4W4G|1|YA|A|2823
4W4G|1|YA|C|2824
4W4G|1|YA|C|2825
4W4G|1|YA|A|2826
4W4G|1|YA|C|2827

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YR

50S ribosomal protein L17