HL_4WCE_026

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

ACGAGGGUUACCGAAU

Length

16 nucleotides

Bulged bases

4WCE|1|X|G|938, 4WCE|1|X|U|939

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_026 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2486

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4WCE|1|X|A|920
4WCE|1|X|C|921
4WCE|1|X|G|922
4WCE|1|X|A|923
4WCE|1|X|G|924
4WCE|1|X|G|925
4WCE|1|X|G|938
4WCE|1|X|U|939
4WCE|1|X|U|940
4WCE|1|X|A|941
4WCE|1|X|C|942
4WCE|1|X|C|943
4WCE|1|X|G|944
4WCE|1|X|A|945
4WCE|1|X|A|946
4WCE|1|X|U|947

Current chains

Chain X

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L25