HL_4WCE_029

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CUAGCUCACUAG

Length

12 nucleotides

Bulged bases

4WCE|1|X|G|1099, 4WCE|1|X|C|1144, 4WCE|1|X|U|1145, 4WCE|1|X|C|1146

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_029 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.2326

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4WCE|1|X|C|1096
4WCE|1|X|U|1097
4WCE|1|X|A|1098
4WCE|1|X|G|1099
4WCE|1|X|C|1144
4WCE|1|X|U|1145
4WCE|1|X|C|1146
4WCE|1|X|A|1147
4WCE|1|X|C|1148
4WCE|1|X|U|1149
4WCE|1|X|A|1150
4WCE|1|X|G|1151

Current chains

Chain X

23S rRNA

Nearby chains