HL_4WCE_038

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4WCE|1|X|A|1658, 4WCE|1|X|A|1660, 4WCE|1|X|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_038 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.0438

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

4WCE|1|X|C|1656
4WCE|1|X|G|1657
4WCE|1|X|A|1658
4WCE|1|X|C|1659
4WCE|1|X|A|1660
4WCE|1|X|C|1661
4WCE|1|X|A|1662
4WCE|1|X|G|1663

Current chains

Chain X

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain P

50S ribosomal protein L22