HL_4WCE_039

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

4WCE|1|X|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_039 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.0839

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4WCE|1|X|A|1673
4WCE|1|X|U|1674
4WCE|1|X|G|1675
4WCE|1|X|A|1676
4WCE|1|X|G|1677
4WCE|1|X|A|1678
4WCE|1|X|A|1679
4WCE|1|X|U|1680
4WCE|1|X|U|1681

Current chains

Chain X

23S rRNA

Nearby chains