HL_4WCE_050

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4WCE|1|X|A|2295, 4WCE|1|X|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_050 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0644

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

4WCE|1|X|C|2291
4WCE|1|X|U|2292
4WCE|1|X|A|2293
4WCE|1|X|A|2294
4WCE|1|X|A|2295
4WCE|1|X|A|2296
4WCE|1|X|G|2297
4WCE|1|X|G|2298
4WCE|1|X|U|2299
4WCE|1|X|A|2300
4WCE|1|X|A|2301
4WCE|1|X|C|2302
4WCE|1|X|G|2303

Current chains

Chain X

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27