HL_4WCE_062

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WCE|1|X|G|2778, 4WCE|1|X|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_062 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1333

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

4WCE|1|X|C|2772
4WCE|1|X|U|2773
4WCE|1|X|G|2774
4WCE|1|X|A|2775
4WCE|1|X|A|2776
4WCE|1|X|A|2777
4WCE|1|X|G|2778
4WCE|1|X|C|2779
4WCE|1|X|A|2780
4WCE|1|X|U|2781
4WCE|1|X|C|2782
4WCE|1|X|U|2783
4WCE|1|X|A|2784
4WCE|1|X|A|2785
4WCE|1|X|G|2786

Current chains

Chain X

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13