HL_4WCE_066

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

4WCE|1|Y|G|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_066 not in the Motif Atlas

Homologous match to HL_4WF9_066

Geometric discrepancy: 0.1974

The information below is about HL_4WF9_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4WCE|1|Y|C|36
4WCE|1|Y|A|37
4WCE|1|Y|U|38
4WCE|1|Y|G|39
4WCE|1|Y|C|40
4WCE|1|Y|C|41
4WCE|1|Y|G|42

Current chains

Chain Y

5S rRNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain L

50S ribosomal protein L18

Chain X

Large subunit ribosomal RNA; LSU rRNA