HL_4WCE_072

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WCE_072 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.136

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4WCE|1|X|A|136
4WCE|1|X|G|137
4WCE|1|X|U|138
4WCE|1|X|U|139
4WCE|1|X|A|140
4WCE|1|X|U|141
4WCE|1|X|G|142
4WCE|1|X|U|143

Current chains

Chain X

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L23