HL_4WF1_060

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4WF1|1|BA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_060 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.3587

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4WF1|1|BA|C|1064
4WF1|1|BA|U|1065
4WF1|1|BA|U|1066
4WF1|1|BA|A|1067
4WF1|1|BA|G|1068
4WF1|1|BA|A|1069
4WF1|1|BA|A|1070
4WF1|1|BA|G|1071
4WF1|1|BA|C|1072
4WF1|1|BA|A|1073
4WF1|1|BA|G|1074

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BI

50S ribosomal protein L11