HL_4WF1_086

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_086 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.152

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4WF1|1|BA|G|2303
4WF1|1|BA|G|2304
4WF1|1|BA|U|2305
4WF1|1|BA|C|2306
4WF1|1|BA|G|2307
4WF1|1|BA|G|2308
4WF1|1|BA|A|2309
4WF1|1|BA|C|2310
4WF1|1|BA|A|2311
4WF1|1|BA|U|2312
4WF1|1|BA|C|2313

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L5