HL_4WF1_114

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

4WF1|1|CA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_114 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1383

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4WF1|1|CA|G|462
4WF1|1|CA|U|463
4WF1|1|CA|U|464
4WF1|1|CA|A|465
4WF1|1|CA|A|466
4WF1|1|CA|U|467
4WF1|1|CA|A|468
4WF1|1|CA|C|469
4WF1|1|CA|C|470

Current chains

Chain CA

16S rRNA

Nearby chains