HL_4WF1_129

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

4WF1|1|CA|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WF1_129 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.191

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4WF1|1|CA|U|1165
4WF1|1|CA|G|1166
4WF1|1|CA|A|1167
4WF1|1|CA|U|1168
4WF1|1|CA|A|1169
4WF1|1|CA|A|1170
4WF1|1|CA|A|1171

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2